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1. Advances in understanding arbuscular mycorrhizal fungal effects on soil nutrient cycling.

Author(s) : Zhang HaiYang; Powell, J. R.

Publisher : Burleigh Dodds Science Publishing Limited, Cambridge, UK

Book chapter : Understanding and improving crop root function 2021 pp.195-212 ref.many

2. The use of plant growth-promoting rhizobacteria (PGPR) to improve root function and crop nutrient use efficiency.

Author(s) : Larrabee, M. M.; Nelson, L. M.

Publisher : Burleigh Dodds Science Publishing Limited, Cambridge, UK

Book chapter : Understanding and improving crop root function 2021 pp.467-492 ref.many

3. The use of arbuscular mycorrhizal fungi to improve root function and nutrient-use efficiency.

Author(s) : Thirkell, T.; Hoysted, G.; Elliott, A.; Field, K.; Daniell, T.

Publisher : Burleigh Dodds Science Publishing Limited, Cambridge, UK

Book chapter : Understanding and improving crop root function 2021 pp.493-529 ref.many

4. Enzymatic and antimicrobial activity of polar strains of soil microfungi.

Author(s) : Nikitin, D. A.; Sadykova, V. S.; Kuvarina, A. E.; Dah, A. G.; Biryukov, M. V.

Publisher : Izdatel'stvo Nauka, St. Petersburg, Russia

Journal article : Mikologiya i Fitopatologiya 2021 Vol.55 No.1 pp.36-50

5. Assessing soil health by measuring fauna.

Author(s) : Crotty, F.

Publisher : Burleigh Dodds Science Publishing Limited, Cambridge, UK

Book chapter : Advances in measuring soil health 2021 pp.3-23 ref.many

6. Quantifying earthworm community structures as indicators of soil health.

Author(s) : Stroud, J. L.

Publisher : Burleigh Dodds Science Publishing Limited, Cambridge, UK

Book chapter : Advances in measuring soil health 2021 pp.25-39 ref.45

7. Characterisation of fungal communities and functions in agricultural soils.

Author(s) : Taylor, A. F. S.; Freitag, T.; Robinson, L. J.; White, D.

Publisher : Burleigh Dodds Science Publishing Limited, Cambridge, UK

Book chapter : Advances in measuring soil health 2021 pp.41-68 ref.many

8. Microbiome engineering: synthetic biology of plant-associated microbiomes in sustainable agriculture.

To support an ever-increasing population, modern agriculture faces numerous challenges that pose major threats to global food and energy security. Plant-associated microbes, with their many plant growth-promoting (PGP) traits, have enormous potential in helping to solve these challenges. However,...

Author(s) : Ke Jing; Wang Bing; Yoshikuni, Y.

Publisher : Elsevier Ltd, Oxford, UK

Journal article : Trends in Biotechnology 2021 Vol.39 No.3 pp.244-261 ref.154

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9. Adsorption of urease as part of a complex protein mixture onto soil and its implications for enzymatic activity.

Understanding adsorption of important proteins as part of a complex protein mixture onto surfaces such as soil is critical for numerous environmental applications. In this study, we investigated the adsorption of urease as part of a total bacterial protein extract from Sporosarcina pasteurii onto...

Author(s) : Pinto Vilar, R.; Ikuma, K.

Publisher : Elsevier Ltd, Oxford, UK

Journal article : Biochemical Engineering Journal 2021 Vol.171

10. Systemic regulation of mitochondria by germline proteostasis prevents protein aggregation in the soma of C. elegans.

Protein aggregation causes intracellular changes in neurons, which elicit signals to modulate proteostasis in the periphery. Beyond the nervous system, a fundamental question is whether other organs also communicate their proteostasis status to distal tissues. Here, we examine whether proteostasis...

Author(s) : Calculli, G.; Lee HyunJu; Shen KoNing; Pham, U.; Herholz, M.; Trifunovic, A.; Dillin, A.; Vilchez, D.

Publisher : American Association for the Advancement of Science, Washington, USA

Journal article : Science Advances 2021 Vol.7 No.26 ref.60

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11. Habitat heterogeneity induced by pyrogenic organic matter in wildfire-perturbed soils mediates bacterial community assembly processes.

Although pyrogenic organic matter (PyOM) generated during wildfires plays a critical role in post-fire ecosystem recovery, the specific mechanisms by which PyOM controls soil microbial community assembly after wildfire perturbation remain largely uncharacterized. Herein we characterized the effect...

Author(s) : Zhang LuJun; Ma Bin; Tang CaiXian; Yu HaoDan; Lv XiaoFei; Rodrigues, J. L. M.; Dahlgren, R. A.; Xu JianMing

Publisher : Nature Publishing Group, London, UK

Journal article : ISME Journal 2021 Vol.15 No.7 pp.1943-1955 ref.58

12. Soil microbial diversity-biomass relationships are driven by soil carbon content across global biomes.

The relationship between biodiversity and biomass has been a long standing debate in ecology. Soil biodiversity and biomass are essential drivers of ecosystem functions. However, unlike plant communities, little is known about how the diversity and biomass of soil microbial communities are...

Author(s) : Bastida, F.; Eldridge, D. J.; García, C.; Png, G. K.; Bardgett, R. D.; Delgado-Baquerizo, M.

Publisher : Nature Publishing Group, London, UK

Journal article : ISME Journal 2021 Vol.15 No.7 pp.2081-2091 ref.81

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13. Biomass of external mycelium of ectomycorrhizal fungi associated with poplars - the impact of tree genotype, tree age and soil environment.

The external mycelium (EM) is an important structural element of the symbiosis between mycorrhizal fungi and trees, fulfilling several important functions in their development and playing a significant role in carbon and nitrogen cycling in soil. This study aimed to estimate and compare the EM...

Author(s) : Karliński, L.

Publisher : Elsevier B.V., Amsterdam, Netherlands

Journal article : Applied Soil Ecology 2021 Vol.160

14. Detection of Azospirillum brasilense by qPCR throughout a maize field trial.

Although Azospirillum brasilense is used in many inoculant formulations, information of its prevalence under field conditions is still scarce. In this work, we inoculated A. brasilense AbV5/AbV6 (2 × 108 CFU ml-1) on maize seeds and then evaluated its colonization profile throughout seventy-five...

Author(s) : Urrea-Valencia, S.; Etto, R. M.; Takahashi, W. Y.; Caires, E. F.; Bini, A. R.; Ayub, R. A.; Stets, M. I.; Cruz, L. M.; Galvão, C. W.

Publisher : Elsevier B.V., Amsterdam, Netherlands

Journal article : Applied Soil Ecology 2021 Vol.160

15. Effect of locally isolated phosphate-solubilizing Pseudomonas aeruginosa IBP26 on the growth parameters of chickpea seedling.

This work was conducted to examine the effect of locally isolated phosphate-solubilizing bacteria on the growth parameters of chickpea seedling cultivated in pots containing Ca3(PO4)2 (tricalcium phosphate). Among the isolated strains, the highest phosphate-solubilizing activity in the broth medium ...

Author(s) : Çöğender, M. E.; Arslan, N. P.; Aydoğan, M. N.

Publisher : Igdir University, Igdir, Turkey

Journal article : Journal of the Institute of Science and Technology 2021 Vol.11 No.2 pp.896-905 ref.43

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16. Fungal biodiversity and metabolic potential of selected fluvisols from the Vistula River valley in Lubelskie, Poland.

Analyses of the soil mycobiome, though limited, are needed to understand interactions in the ecosystem. We have attempted to assess structural and functional differentiation of fluvisol mycobiomes located in the Natura 2000 area in Vistula River valet in Lubelskie, Poland. The metabolic potential...

Author(s) : Furtak, K.; Grządziel, J.; Gałązka, A.; Gawryjołek, K.; Niedźwiecki, J.

Publisher : Elsevier B.V., Amsterdam, Netherlands

Journal article : Applied Soil Ecology 2021 Vol.160

17. Different plant growth regulators on improvement of potato (Solanum tuberosum L.).

The study compared the effects of MS medium containing 0.1 mg L-1 gibberellic acid (GA3) and α-naphthaleneacetic acid (NAA) in combination with 2.0 mg L-1 of kinetin (KIN), 2.0 mg L-1 of benzyl aminopurine (BAP), 1.0 mg L-1 of zeatine riboside (ZR), and 0.5 mg L-1 of jasmonic acid (JA) for the...

Author(s) : Kumlay, A. M.; Yildirim, B.; Kaya, C.

Publisher : Igdir University, Igdir, Turkey

Journal article : Journal of the Institute of Science and Technology 2021 Vol.11 No.2 pp.1603-1615 ref.41

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18. Effects of salinity, growth condition, and soil type on shoot dry matter of alfalfa (Medicago sativa) - a meta-analysis.

Salinity is a spatially complex and dynamic property of soil that adversely impacts plant metabolism and rhizobium capacity for symbiotic nitrogen fixation, thus affecting alfalfa (Medicago sativa) growth. The objective of present study was to conduct the first meta-analysis to understand the...

Author(s) : Bansal, S.; Yin XinHua

Publisher : Taylor & Francis, Philadelphia, USA

Journal article : Communications in Soil Science and Plant Analysis 2021 Vol.52 No.3 pp.201-211 ref.many

19. 1-undecene from Pseudomonas aeruginosa is an olfactory signal for flight-or-fight response in Caenorhabditis elegans.

Animals possess conserved mechanisms to detect pathogens and to improve survival in their presence by altering their own behavior and physiology. Here, we utilize Caenorhabditis elegans as a model host to ask whether bacterial volatiles constitute microbe-associated molecular patterns. Using gas...

Author(s) : Deep Prakash; Akhil Ms; Buddidhathi Radhika; Radhika Venkatesan; Chalasani, S. H.; Varsha Singh

Publisher : Wiley, Weinheim, Germany

Journal article : EMBO Journal 2021 Vol.40 No.13 ref.44

20. Draft genome sequence of Streptomyces strain SJ1-7, a soil bacterial isolate.

The draft genome sequence of Streptomyces strain SJ1-7, a bacterial strain isolated from the rhizosphere of a Pinus densiflora plant, is reported. The whole-genome assembly comprised 7.9 Mbp, with a GC content of 71.80% and 4,262 predicted protein-coding genes.

Author(s) : Chi Wonjae; Da Somkim; Kim Soonok; Choi Euddeum; Park Sookyoung

Publisher : American Society for Microbiology (ASM), Washington, D.C., USA

Journal article : Microbiology Resource Announcements 2021 Vol.10 No.10 ref.14

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21. Complete genome sequence of kaistia sp. strain 32k, isolated from soil as a mixed single colony with methylobacterium sp. strain me121.

Kaistia sp. strain 32K, an aerobic Gram-negative bacterium, was isolated from soil in Japan. Here, we report the complete genome sequence of this bacterium, which has a 5.4-Mbp genome sequence, containing 4,919 protein-coding sequences.

Author(s) : Ito, M.; Shimizu, T.; Nakamura, A.

Publisher : American Society for Microbiology (ASM), Washington, D.C., USA

Journal article : Microbiology Resource Announcements 2021 Vol.10 No.10 ref.3

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22. Soil metagenome sequences from a geothermal site at mount Melbourne in Antarctica.

Here, we examined two soil metagenome data sets obtained from a geothermal site at the summit of Mount Melbourne in Antarctica. The geothermal soil microbiome exhibits very unique features of prokaryotic diversity and functions, which will provide deeper insight into the adaptation and evolution of ...

Author(s) : Park, M.; Choe, Y. H.; Kim, M.

Publisher : American Society for Microbiology (ASM), Washington, D.C., USA

Journal article : Microbiology Resource Announcements 2021 Vol.10 No.10 ref.8

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23. Response to edaphoclimatic conditions and crop management of the bacterial microbiome of Musa acuminata rhizosphere profiled by 16S rRNA gene amplicon sequencing.

Bacterial rhizospheric microbiomes of Musa acuminata cultivated in farms close to the west and east Mexican coasts and with different climate, soils, and crop management practices were characterized by 16S rRNA gene amplicon sequencing. Results showed that rhizospheric microbiome composition...

Author(s) : Torre-González, F. J. de la; Fernández-Castillo, E.; Azaharez-Llorente, D.; Lara, J.; Avendaño, E.; Castañeda, A.; Gómez, S.; Gaxiola, J.; Asaff-Torres, A.; Verdín, J.

Publisher : American Society for Microbiology (ASM), Washington, D.C., USA

Journal article : Microbiology Resource Announcements 2021 Vol.10 No.10 ref.11

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24. Characterization of small non-coding RNA Bpsr145 in Bacillus pumilus.

Objective: Based on previous transcriptome analysis on Bacillus pumilus SCU11, the candidate sRNA Bpsr145 with obvious differences at different stages need to he identified and analysed. Method: The expression of Bpsr145 was confirmed by Northern blotting and independent transcription. Then we used ...

Author(s) : Song Ting; Xu YunRan; He TingTing; Qin Lin; Huang Yu; Wang HaiYan

Publisher : Editorial Department of Southwest China Journal of Agricultural Sciences, Chengdu, China

Journal article : Southwest China Journal of Agricultural Sciences 2021 Vol.34 No.1 pp.52-57 ref.16

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25. Organic matter composition, BaP biodegradation and microbial communities at sites near and far from the bioanode in a soil microbial fuel cell.

Bioanodes in a soil microbial fuel cell (SMFC) can serve as sustainable electron acceptors in microbial metabolism processes; thus, SMFCs are considered a promising in situ bioremediation technology. Most related studies have focused on the removal efficiency of contaminants. Relatively few efforts ...

Author(s) : Liang YinXiu; Ji Min; Zhai HongYan; Zhao Jun

Publisher : Elsevier Ltd, Oxford, UK

Journal article : Science of the Total Environment 2021 Vol.772

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